PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5304_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 242aa    MW: 27345 Da    PI: 6.6841
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5304_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2561e-17108158255
                                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                           ++GVr ++ +g+++AeIrd + ng   r++lg+f++ae Aa a+++a+ +++g
  cra_locus_5304_iso_1_len_1004_ver_3 108 SFRGVRKRP-WGKFAAEIRDSTRNG--IRVWLGTFDSAEAAALAYDQAAFSMRG 158
                                          59*******.**********44465..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.63E-19107168No hitNo description
PROSITE profilePS5103222.603108166IPR001471AP2/ERF domain
SMARTSM003804.2E-37108172IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-29108166IPR001471AP2/ERF domain
PRINTSPR003671.7E-9109120IPR001471AP2/ERF domain
PfamPF008472.3E-12109158IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-21109167IPR016177DNA-binding domain
PRINTSPR003671.7E-9132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
XPSCGLLKNY CTKASKKKNL HKLEMDSSVF HSEFSSDSSF GSMDSFPWNS QGFFHNSLPF  60
DENDSEEMLL YGLIAEAPQE TSETNSSDQM KEDEVSSKSG ENPTKEKSFR GVRKRPWGKF  120
AAEIRDSTRN GIRVWLGTFD SAEAAALAYD QAAFSMRGSA AVLNFPVDRV RESLNDLKFN  180
IEDGCSPVIA LKRKHSMRRR NVNRKVKPRE VKVENLLVFE DLGKDYLEEL LSTSXKENTS  240
HS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-28107167161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093429.13e-93Ethylene-responsive transcription factor 1B
SwissprotQ8LDC82e-81ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A068TT861e-97A0A068TT86_COFCA; Uncharacterized protein
STRINGPOPTR_0010s08300.13e-84(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165